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fMRIPrepCleanup is a tool used to delete 'junk' files produced by fMRI Motion correction, slice timing correction, spatial filtering, temporal filtering, global intensity normalisation. You can just see they're really just the localizers here and if we go to
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Fmriprep Tutorial [TRAIN-03-2022]
Principles of fMRI Part 1, Module 14: Pre-processing II
preprocessing fmri data in SPM12
AFNI Tutorial #4-c: Reviewing Preprocessing
fMRIPrepCleanup: Instructions for use
fMRI Short Course #4c: Checking your Preprocessing
fMRI Short Course #4a: Preprocessing Part 1- Brain Extraction
12. FMRI1: Preprocessing (Fmri1 E2)
ezBIDS tutorial
Full Guide
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Last Updated: June 8, 2026
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