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In this video, we'll see how to add and delete bonds in How to run molecular dynamics using QWikMD GUI, using as example COVID-19 main protease in complex with an inhibitor N3. This video is in support of project_1, a Python coding activity completed by students in Chem-105 at SJSU, and also by new ... set sel0 [atomselect 0 " resid 37 to 61 and name CA"] set sel1 [atomselect 1 " resid 37 to 61 and name CA"] set M [measure fit ...

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Last Updated: June 16, 2026

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VMD Tutorial (Lec-12) Add and Delete Bonds in VMD Profile
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