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This beginner-friendly video introduces the four key file formats used in genomic data analysis: FASTA, Currently, the second most viewed video on the channel is the identification of DEGs using the Galaxy Platform. With the recent ... In this video I will explain the HISAT2 python script that we created in order to perform Here I retrieve the genome fasta and gtf annotation files from ensemble and build the genome index required for Welcome to Lecture 33 of the Bioinformatics Data Analysis using Linux, Python & R series! In this Gene expression in breast cancer triple negative cells, MDA 231, has been compared with gene expression in Estrogen receptor ...

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Essential Genomic File Formats for Beginners: FASTA, FASTQ, SAM/BAM, and VCF Explained
RNAseq tutorial - part 2 - Aligning reads with STAR
Alignment Part 3: RNA-Seq alignment
RNASeq Analysis | Differential Expressed Genes (DEGs) from FastQ
STAT115 Chapter 4.3 RNA-seq Alignment
Mastering RNA-Seq | Step-by-Step Guide to Reference Genome Alignment with FASTQ Files
RNA Seq Analysis: Read Alignment Using HISAT2 Part 2
How to Align FASTQ Reads to a Reference Genome with BWA MEM – CLI NGS Tutorial #5
RNAseq tutorial - part 1 - building STAR genome index
RNA-Seq Read Alignment using Bowtie2 | Align FASTQ to Genome | Ep. 33
FastQ to BAM - Align reads to the reference genome with STAR - Step 5
How to Index a Reference Genome with STAR for RNA-seq Alignment

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Last Updated: June 12, 2026

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Media Gallery

Setup RNA-Seq Pipeline from scratch: fastq (reads) to counts | Step-by-Step Tutorial
How to Align RNA-seq FASTQ Reads with STAR
RNA-seq Alignment Tutorial: FASTQ to Count Matrix with STAR & featureCounts
Essential Genomic File Formats for Beginners: FASTA, FASTQ, SAM/BAM, and VCF Explained
RNAseq tutorial - part 2 - Aligning reads with STAR
Alignment Part 3: RNA-Seq alignment
RNASeq Analysis | Differential Expressed Genes (DEGs) from FastQ
STAT115 Chapter 4.3 RNA-seq Alignment